Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
MSH4O15457 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
MSH4O15457 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.22■□□□□ 0.83
MSH4O15457 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH4O15457 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH4O15457 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.22■□□□□ 0.83
MSH4O15457 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
MSH4O15457 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.22■□□□□ 0.83
MSH4O15457 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH4O15457 MINOS1P3-201ENST00000457048 203 ntBASIC20.22■□□□□ 0.83
MSH4O15457 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.22■□□□□ 0.83
MSH4O15457 AC138028.4-201ENST00000564984 1845 ntBASIC20.22■□□□□ 0.83
MSH4O15457 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
MSH4O15457 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH4O15457 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH4O15457 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.22■□□□□ 0.83
MSH4O15457 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.22■□□□□ 0.83
MSH4O15457 FLJ13224-201ENST00000313737 1514 ntBASIC20.22■□□□□ 0.83
MSH4O15457 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH4O15457 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.21■□□□□ 0.83
MSH4O15457 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
MSH4O15457 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH4O15457 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
MSH4O15457 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH4O15457 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH4O15457 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.21■□□□□ 0.83
MSH4O15457 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH4O15457 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.21■□□□□ 0.83
MSH4O15457 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH4O15457 AC138894.3-201ENST00000603787 634 ntBASIC20.21■□□□□ 0.83
MSH4O15457 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
MSH4O15457 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
MSH4O15457 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH4O15457 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH4O15457 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
MSH4O15457 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH4O15457 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
MSH4O15457 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH4O15457 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
MSH4O15457 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH4O15457 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.2■□□□□ 0.82
MSH4O15457 TSPY19P-201ENST00000418461 509 ntBASIC20.2■□□□□ 0.82
MSH4O15457 TSPY18P-201ENST00000441642 509 ntBASIC20.2■□□□□ 0.82
MSH4O15457 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH4O15457 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH4O15457 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.2■□□□□ 0.82
MSH4O15457 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH4O15457 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH4O15457 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH4O15457 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH4O15457 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH4O15457 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH4O15457 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH4O15457 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
MSH4O15457 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH4O15457 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
MSH4O15457 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH4O15457 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.19■□□□□ 0.82
MSH4O15457 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 KRT126P-201ENST00000549467 1181 ntBASIC20.19■□□□□ 0.82
MSH4O15457 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH4O15457 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
MSH4O15457 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 AL732292.2-201ENST00000609649 430 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms