Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NPIPA2E9PIF3 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 AC246785.2-201ENST00000432512 513 ntBASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 VENTXP7-201ENST00000475503 772 ntBASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 AC004263.2-201ENST00000617183 678 ntBASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NPIPA2E9PIF3 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 FAAHP1-202ENST00000446499 1238 ntBASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 KRT17P6-201ENST00000453795 1220 ntBASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 EMBP1-201ENST00000458200 901 ntBASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 RN7SL606P-201ENST00000472779 293 ntBASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 KRT18P31-201ENST00000506277 1292 ntBASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 AC011840.4-201ENST00000578471 627 ntBASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.42■□□□□ 0.22
NPIPA2E9PIF3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 AC104581.1-202ENST00000635932 2618 ntBASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.41■□□□□ 0.22
NPIPA2E9PIF3 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms