Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 MYLKP1-201ENST00000509077 1580 ntBASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 AP000593.1-201ENST00000393668 712 ntBASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 AC093827.2-201ENST00000512654 315 ntBASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 AC092338.2-201ENST00000568827 1415 ntBASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC39Q9UFE4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC39Q9UFE4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC39Q9UFE4 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC39Q9UFE4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC39Q9UFE4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC39Q9UFE4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC39Q9UFE4 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 TSPY14P-201ENST00000303979 915 ntBASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 AC007663.1-201ENST00000438948 1240 ntBASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 TSPY15P-201ENST00000457163 923 ntBASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 AC128688.1-201ENST00000487626 519 ntBASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 EGLN1P1-201ENST00000531623 762 ntBASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC39Q9UFE4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 MMP23A-201ENST00000234610 1017 ntBASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms