Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
CLCF1Q9UBD9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.03■□□□□ 0.16
CLCF1Q9UBD9 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLCF1Q9UBD9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLCF1Q9UBD9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLCF1Q9UBD9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLCF1Q9UBD9 PHGDH-209ENST00000641074 1780 ntBASIC16.03■□□□□ 0.16
CLCF1Q9UBD9 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 TNXA-203ENST00000507684 2038 ntBASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 WIZP1-201ENST00000531444 2299 ntBASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 REXO1L6P-202ENST00000619970 1078 ntBASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLCF1Q9UBD9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 AC125634.1-201ENST00000438758 1403 ntBASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLCF1Q9UBD9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 AC079781.3-201ENST00000449110 356 ntBASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 SAPCD2P3-201ENST00000455031 850 ntBASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 AC009533.2-201ENST00000543664 586 ntBASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 AC104692.2-201ENST00000603054 253 ntBASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 TP73-AS1-210ENST00000637775 1455 ntBASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 AC093503.3-201ENST00000624917 2352 ntBASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLCF1Q9UBD9 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms