Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 TSPY12P-201ENST00000421279 868 ntBASIC17.91■□□□□ 0.46
VPS35Q96QK1 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 DUTP2-201ENST00000519164 463 ntBASIC17.91■□□□□ 0.46
VPS35Q96QK1 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
VPS35Q96QK1 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS35Q96QK1 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 ATP5G2P1-201ENST00000433580 426 ntBASIC17.9■□□□□ 0.46
VPS35Q96QK1 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 RN7SL606P-201ENST00000472779 293 ntBASIC17.9■□□□□ 0.46
VPS35Q96QK1 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS35Q96QK1 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VPS35Q96QK1 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
VPS35Q96QK1 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
VPS35Q96QK1 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
VPS35Q96QK1 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 HTR7P1-202ENST00000624664 4411 ntBASIC17.89■□□□□ 0.45
VPS35Q96QK1 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms