Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
AP1S3Q96PC3 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
AP1S3Q96PC3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC13.68□□□□□ -0.22
AP1S3Q96PC3 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
AP1S3Q96PC3 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC13.67□□□□□ -0.22
AP1S3Q96PC3 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 MIPEPP3-201ENST00000412105 444 ntBASIC13.66□□□□□ -0.22
AP1S3Q96PC3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 AC091874.3-201ENST00000512672 1195 ntBASIC13.66□□□□□ -0.22
AP1S3Q96PC3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 HEIH-201ENST00000623091 1652 ntBASIC13.66□□□□□ -0.22
AP1S3Q96PC3 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
AP1S3Q96PC3 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 SNAI3-AS1-205ENST00000568633 2096 ntBASIC13.65□□□□□ -0.22
AP1S3Q96PC3 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
AP1S3Q96PC3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms