Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 KRT16P4-201ENST00000453883 522 ntBASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NKX2-3Q8TAU0 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 AC092865.5-201ENST00000545435 363 ntBASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX2-3Q8TAU0 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 AC068472.1-201ENST00000474589 881 ntBASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 KRT18P58-201ENST00000527480 1120 ntBASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
NKX2-3Q8TAU0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NKX2-3Q8TAU0 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NKX2-3Q8TAU0 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
NKX2-3Q8TAU0 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NKX2-3Q8TAU0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NKX2-3Q8TAU0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NKX2-3Q8TAU0 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 AL592071.1-201ENST00000611956 408 ntBASIC21.32■■□□□ 1
NKX2-3Q8TAU0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.32■■□□□ 1
NKX2-3Q8TAU0 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 ABALON-201ENST00000629058 1903 ntBASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms