Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 AC022616.7-201ENST00000525383 220 ntBASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 LINC01238-205ENST00000567549 1107 ntBASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 AL133373.2-201ENST00000623187 2828 ntBASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CCDC65Q8IXS2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 AC068880.1-201ENST00000507289 2297 ntBASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 LINC01311-201ENST00000565162 1445 ntBASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 KRT18P21-201ENST00000515767 1272 ntBASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 ZNF444P1-201ENST00000559497 298 ntBASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 HYMAI.1-201ENST00000620949 238 ntBASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC65Q8IXS2 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 AC022898.2-201ENST00000616822 1312 ntBASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 KRT18P55-202ENST00000578578 1546 ntBASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 MIR662-201ENST00000384847 95 ntBASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms