Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC10.42□□□□□ -0.74
RPS28P62857 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC10.42□□□□□ -0.74
RPS28P62857 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC10.42□□□□□ -0.74
RPS28P62857 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
RPS28P62857 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC10.42□□□□□ -0.74
RPS28P62857 SMPD5-203ENST00000639008 1464 ntBASIC10.42□□□□□ -0.74
RPS28P62857 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
RPS28P62857 COL6A4P2-202ENST00000504443 2753 ntBASIC10.42□□□□□ -0.74
RPS28P62857 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC10.42□□□□□ -0.74
RPS28P62857 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
RPS28P62857 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
RPS28P62857 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 AC073347.1-201ENST00000421633 2643 ntBASIC10.41□□□□□ -0.74
RPS28P62857 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC10.41□□□□□ -0.74
RPS28P62857 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 SLC6A6P1-201ENST00000413933 1850 ntBASIC10.41□□□□□ -0.74
RPS28P62857 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 FLJ13224-201ENST00000313737 1514 ntBASIC10.41□□□□□ -0.74
RPS28P62857 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 TCAF1P1-201ENST00000414990 2232 ntBASIC10.41□□□□□ -0.74
RPS28P62857 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC10.41□□□□□ -0.74
RPS28P62857 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC10.41□□□□□ -0.74
RPS28P62857 BEND3P1-201ENST00000421591 1944 ntBASIC10.41□□□□□ -0.74
RPS28P62857 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
RPS28P62857 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
RPS28P62857 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC10.4□□□□□ -0.74
RPS28P62857 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC10.4□□□□□ -0.74
RPS28P62857 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
RPS28P62857 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC10.4□□□□□ -0.74
RPS28P62857 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
RPS28P62857 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC10.4□□□□□ -0.74
RPS28P62857 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
RPS28P62857 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 AOC4P-203ENST00000566825 2289 ntBASIC10.4□□□□□ -0.74
RPS28P62857 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC10.4□□□□□ -0.74
RPS28P62857 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPS28P62857 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms