Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC12.67□□□□□ -0.38
CKS1BP61024 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 DUSP5P2-201ENST00000426873 1033 ntBASIC12.67□□□□□ -0.38
CKS1BP61024 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC12.67□□□□□ -0.38
CKS1BP61024 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC12.67□□□□□ -0.38
CKS1BP61024 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC12.67□□□□□ -0.38
CKS1BP61024 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 AC083906.6-201ENST00000641366 219 ntBASIC12.67□□□□□ -0.38
CKS1BP61024 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 AC092368.3-202ENST00000574180 1591 ntBASIC12.67□□□□□ -0.38
CKS1BP61024 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
CKS1BP61024 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
CKS1BP61024 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC12.67□□□□□ -0.38
CKS1BP61024 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CKS1BP61024 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
CKS1BP61024 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 PCDHB17P-201ENST00000539533 2393 ntBASIC12.66□□□□□ -0.38
CKS1BP61024 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
CKS1BP61024 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC12.66□□□□□ -0.38
CKS1BP61024 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC12.66□□□□□ -0.38
CKS1BP61024 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 REXO2-208ENST00000539754 791 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC12.66□□□□□ -0.38
CKS1BP61024 AC080038.1-201ENST00000611274 1154 ntBASIC12.66□□□□□ -0.38
CKS1BP61024 ANKRD20A6P-201ENST00000618763 204 ntBASIC12.66□□□□□ -0.38
CKS1BP61024 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC12.66□□□□□ -0.38
CKS1BP61024 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms