Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC138932.1-201ENST00000534164 6830 ntBASIC17.69■□□□□ 0.42
SHMT2P34897 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.69■□□□□ 0.42
SHMT2P34897 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.69■□□□□ 0.42
SHMT2P34897 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.69■□□□□ 0.42
SHMT2P34897 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.69■□□□□ 0.42
SHMT2P34897 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.69■□□□□ 0.42
SHMT2P34897 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.69■□□□□ 0.42
SHMT2P34897 AC011498.5-201ENST00000592027 486 ntBASIC17.69■□□□□ 0.42
SHMT2P34897 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.69■□□□□ 0.42
SHMT2P34897 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.69■□□□□ 0.42
SHMT2P34897 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 GMCL1P1-201ENST00000463439 1581 ntBASIC17.69■□□□□ 0.42
SHMT2P34897 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 AL024508.2-201ENST00000607749 1894 ntBASIC17.69■□□□□ 0.42
SHMT2P34897 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.69■□□□□ 0.42
SHMT2P34897 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SHMT2P34897 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SHMT2P34897 AC099343.3-201ENST00000605834 2503 ntBASIC17.68■□□□□ 0.42
SHMT2P34897 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SHMT2P34897 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
SHMT2P34897 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.68■□□□□ 0.42
SHMT2P34897 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
SHMT2P34897 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SHMT2P34897 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.68■□□□□ 0.42
SHMT2P34897 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.68■□□□□ 0.42
SHMT2P34897 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.68■□□□□ 0.42
SHMT2P34897 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SHMT2P34897 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.68■□□□□ 0.42
SHMT2P34897 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.68■□□□□ 0.42
SHMT2P34897 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.68■□□□□ 0.42
SHMT2P34897 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.68■□□□□ 0.42
SHMT2P34897 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.68■□□□□ 0.42
SHMT2P34897 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.68■□□□□ 0.42
SHMT2P34897 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.68■□□□□ 0.42
SHMT2P34897 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHMT2P34897 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SHMT2P34897 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SHMT2P34897 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.67■□□□□ 0.42
SHMT2P34897 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.67■□□□□ 0.42
SHMT2P34897 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 GPR32P1-201ENST00000601788 811 ntBASIC17.67■□□□□ 0.42
SHMT2P34897 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.67■□□□□ 0.42
SHMT2P34897 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.67■□□□□ 0.42
SHMT2P34897 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.67■□□□□ 0.42
SHMT2P34897 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SHMT2P34897 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms