Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CHMP2AO43633 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.3■□□□□ 0.84
CHMP2AO43633 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP2AO43633 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP2AO43633 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.3■□□□□ 0.84
CHMP2AO43633 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CHMP2AO43633 MIR3652-201ENST00000579335 131 ntBASIC20.3■□□□□ 0.84
CHMP2AO43633 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.3■□□□□ 0.84
CHMP2AO43633 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.3■□□□□ 0.84
CHMP2AO43633 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.3■□□□□ 0.84
CHMP2AO43633 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.3■□□□□ 0.84
CHMP2AO43633 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.3■□□□□ 0.84
CHMP2AO43633 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.3■□□□□ 0.84
CHMP2AO43633 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CHMP2AO43633 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 AC093010.1-201ENST00000473625 1624 ntBASIC20.3■□□□□ 0.84
CHMP2AO43633 AC233702.3-201ENST00000578656 1387 ntBASIC20.3■□□□□ 0.84
CHMP2AO43633 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP2AO43633 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.3■□□□□ 0.84
CHMP2AO43633 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP2AO43633 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.29■□□□□ 0.84
CHMP2AO43633 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.29■□□□□ 0.84
CHMP2AO43633 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CHMP2AO43633 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.29■□□□□ 0.84
CHMP2AO43633 AC074051.2-201ENST00000565115 352 ntBASIC20.29■□□□□ 0.84
CHMP2AO43633 AP005901.3-202ENST00000581653 237 ntBASIC20.29■□□□□ 0.84
CHMP2AO43633 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 AC009154.2-201ENST00000621177 724 ntBASIC20.29■□□□□ 0.84
CHMP2AO43633 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CHMP2AO43633 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.29■□□□□ 0.84
CHMP2AO43633 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CHMP2AO43633 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CHMP2AO43633 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP2AO43633 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
CHMP2AO43633 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
CHMP2AO43633 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.29■□□□□ 0.84
CHMP2AO43633 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.28■□□□□ 0.84
CHMP2AO43633 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP2AO43633 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.28■□□□□ 0.84
CHMP2AO43633 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP2AO43633 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.28■□□□□ 0.84
CHMP2AO43633 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.28■□□□□ 0.84
CHMP2AO43633 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP2AO43633 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 AC068472.1-201ENST00000474589 881 ntBASIC20.28■□□□□ 0.84
CHMP2AO43633 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP2AO43633 PRELID1P1-202ENST00000567272 903 ntBASIC20.28■□□□□ 0.84
CHMP2AO43633 AC011840.4-201ENST00000578471 627 ntBASIC20.28■□□□□ 0.84
CHMP2AO43633 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CHMP2AO43633 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CHMP2AO43633 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.28■□□□□ 0.84
CHMP2AO43633 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP2AO43633 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CHMP2AO43633 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.27■□□□□ 0.84
CHMP2AO43633 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
CHMP2AO43633 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.27■□□□□ 0.84
CHMP2AO43633 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP2AO43633 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms