Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC188H7C350 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC188H7C350 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC188H7C350 AC116562.2-201ENST00000507042 360 ntBASIC18.79■□□□□ 0.6
CCDC188H7C350 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC188H7C350 AC006058.3-201ENST00000606217 1069 ntBASIC18.79■□□□□ 0.6
CCDC188H7C350 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC188H7C350 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC188H7C350 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CCDC188H7C350 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC188H7C350 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC188H7C350 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC188H7C350 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC188H7C350 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC188H7C350 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
CCDC188H7C350 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC188H7C350 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC188H7C350 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC188H7C350 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC188H7C350 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC188H7C350 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC188H7C350 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC188H7C350 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 HLA-L-209ENST00000420110 1011 ntBASIC18.78■□□□□ 0.6
CCDC188H7C350 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC188H7C350 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC188H7C350 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC188H7C350 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC188H7C350 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC188H7C350 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC188H7C350 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC188H7C350 AC011676.5-201ENST00000624864 2660 ntBASIC18.77■□□□□ 0.6
CCDC188H7C350 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC188H7C350 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC188H7C350 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CCDC188H7C350 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC188H7C350 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.77■□□□□ 0.6
CCDC188H7C350 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC188H7C350 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 FAM197Y1-201ENST00000421178 764 ntBASIC18.77■□□□□ 0.6
CCDC188H7C350 AC097488.1-201ENST00000507834 756 ntBASIC18.77■□□□□ 0.6
CCDC188H7C350 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.77■□□□□ 0.6
CCDC188H7C350 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.77■□□□□ 0.6
CCDC188H7C350 KRT18P6-201ENST00000555540 1265 ntBASIC18.77■□□□□ 0.6
CCDC188H7C350 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC188H7C350 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC188H7C350 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC188H7C350 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC188H7C350 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC188H7C350 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC188H7C350 LINC00304-203ENST00000565008 1864 ntBASIC18.77■□□□□ 0.6
CCDC188H7C350 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
CCDC188H7C350 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC188H7C350 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC188H7C350 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.59
CCDC188H7C350 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC188H7C350 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
CCDC188H7C350 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CCDC188H7C350 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC188H7C350 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC188H7C350 AC106820.2-201ENST00000563775 3264 ntBASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms