Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 TEX21P-204ENST00000641479 1693 ntBASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 AL160237.2-201ENST00000556165 472 ntBASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 AC024563.2-201ENST00000603282 481 ntBASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.74■□□□□ 0.43
TMX2-CTNND1H3BSU7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 FOSL1P1-201ENST00000511041 816 ntBASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 AL662844.1-201ENST00000546340 181 ntBASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.73■□□□□ 0.43
TMX2-CTNND1H3BSU7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 KRT89P-201ENST00000620027 1478 ntBASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 EMBP1-201ENST00000458200 901 ntBASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 AC074051.2-201ENST00000565115 352 ntBASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 AL732292.2-201ENST00000609649 430 ntBASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms