Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.94■■□□□ 1.1
RPAP1Q9BWH6 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
RPAP1Q9BWH6 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RPAP1Q9BWH6 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.94■■□□□ 1.1
RPAP1Q9BWH6 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
RPAP1Q9BWH6 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RPAP1Q9BWH6 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RPAP1Q9BWH6 SDHAP2-201ENST00000455183 2001 ntBASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 LINC01711-201ENST00000598340 967 ntBASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
RPAP1Q9BWH6 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 AKR1C7P-201ENST00000305623 895 ntBASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 AC099336.1-202ENST00000602961 463 ntBASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 AL353801.3-201ENST00000609898 542 ntBASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 IGHV3-41-201ENST00000613121 348 ntBASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
RPAP1Q9BWH6 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 AC008687.5-201ENST00000593746 558 ntBASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 AL121912.1-201ENST00000603683 238 ntBASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
RPAP1Q9BWH6 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.9■■□□□ 1.1
RPAP1Q9BWH6 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP1Q9BWH6 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
RPAP1Q9BWH6 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
RPAP1Q9BWH6 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP1Q9BWH6 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP1Q9BWH6 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPAP1Q9BWH6 KRT16P4-201ENST00000453883 522 ntBASIC21.9■■□□□ 1.1
RPAP1Q9BWH6 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms