Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.95■□□□□ 0.46
VPS35Q96QK1 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.95■□□□□ 0.46
VPS35Q96QK1 AC069148.1-201ENST00000608741 768 ntBASIC17.95■□□□□ 0.46
VPS35Q96QK1 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS35Q96QK1 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS35Q96QK1 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS35Q96QK1 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 AC016734.2-201ENST00000624325 1377 ntBASIC17.94■□□□□ 0.46
VPS35Q96QK1 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 BICD1-207ENST00000551848 1962 ntBASIC17.94■□□□□ 0.46
VPS35Q96QK1 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 AC090616.6-201ENST00000582640 721 ntBASIC17.94■□□□□ 0.46
VPS35Q96QK1 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VPS35Q96QK1 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 LINC00602-201ENST00000629776 2065 ntBASIC17.94■□□□□ 0.46
VPS35Q96QK1 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS35Q96QK1 AL096828.2-201ENST00000567259 1965 ntBASIC17.93■□□□□ 0.46
VPS35Q96QK1 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 CHCHD2P8-201ENST00000429873 447 ntBASIC17.93■□□□□ 0.46
VPS35Q96QK1 KRT18P65-201ENST00000439811 1286 ntBASIC17.93■□□□□ 0.46
VPS35Q96QK1 TSSC2-201ENST00000450217 709 ntBASIC17.93■□□□□ 0.46
VPS35Q96QK1 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 AC009154.2-201ENST00000621177 724 ntBASIC17.93■□□□□ 0.46
VPS35Q96QK1 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS35Q96QK1 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 AC132938.6-201ENST00000623828 1655 ntBASIC17.93■□□□□ 0.46
VPS35Q96QK1 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS35Q96QK1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.92■□□□□ 0.46
VPS35Q96QK1 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 UPK3BP1-201ENST00000428678 509 ntBASIC17.92■□□□□ 0.46
VPS35Q96QK1 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 GUSBP12-201ENST00000513727 720 ntBASIC17.92■□□□□ 0.46
VPS35Q96QK1 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS35Q96QK1 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS35Q96QK1 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms