Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 IGHV3-47-201ENST00000425060 335 ntBASIC20.99■□□□□ 0.95
TRERF1Q96PN7 AC246785.2-201ENST00000432512 513 ntBASIC20.99■□□□□ 0.95
TRERF1Q96PN7 EMBP1-201ENST00000458200 901 ntBASIC20.99■□□□□ 0.95
TRERF1Q96PN7 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 AC138894.3-201ENST00000603787 634 ntBASIC20.99■□□□□ 0.95
TRERF1Q96PN7 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 AL499627.1-201ENST00000569373 2188 ntBASIC20.99■□□□□ 0.95
TRERF1Q96PN7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 AC099336.1-202ENST00000602961 463 ntBASIC20.98■□□□□ 0.95
TRERF1Q96PN7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 SDHAP2-201ENST00000455183 2001 ntBASIC20.98■□□□□ 0.95
TRERF1Q96PN7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRERF1Q96PN7 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 FAAHP1-202ENST00000446499 1238 ntBASIC20.97■□□□□ 0.95
TRERF1Q96PN7 AC091607.1-201ENST00000490318 1060 ntBASIC20.97■□□□□ 0.95
TRERF1Q96PN7 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 AP005901.3-202ENST00000581653 237 ntBASIC20.97■□□□□ 0.95
TRERF1Q96PN7 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRERF1Q96PN7 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms