Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 AC005332.3-201ENST00000589904 676 ntBASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 AC024563.2-201ENST00000603282 481 ntBASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 AC012313.10-201ENST00000623509 926 ntBASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 OR6D1P-202ENST00000641007 5290 ntBASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CLIP3Q96DZ5 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CLIP3Q96DZ5 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 AP002383.4-201ENST00000442518 975 ntBASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms