Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 AC243732.1-201ENST00000612648 864 ntBASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 AP001271.2-201ENST00000624018 1556 ntBASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 CCDC92B-201ENST00000575506 885 ntBASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC28AQ8IWP9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 SLC7A5P2-201ENST00000553010 536 ntBASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 AC104187.1-201ENST00000607510 612 ntBASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms