Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
KRT40Q6A162 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
KRT40Q6A162 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
KRT40Q6A162 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT40Q6A162 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
KRT40Q6A162 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.97■□□□□ 0.95
KRT40Q6A162 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.97■□□□□ 0.95
KRT40Q6A162 SPDYE15P-201ENST00000424157 909 ntBASIC20.97■□□□□ 0.95
KRT40Q6A162 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 AL671277.2-201ENST00000458060 996 ntBASIC20.97■□□□□ 0.95
KRT40Q6A162 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.97■□□□□ 0.95
KRT40Q6A162 AC034232.1-201ENST00000506026 1064 ntBASIC20.97■□□□□ 0.95
KRT40Q6A162 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.97■□□□□ 0.95
KRT40Q6A162 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.97■□□□□ 0.95
KRT40Q6A162 AC116407.4-201ENST00000623319 1061 ntBASIC20.97■□□□□ 0.95
KRT40Q6A162 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
KRT40Q6A162 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT40Q6A162 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.96■□□□□ 0.95
KRT40Q6A162 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.96■□□□□ 0.95
KRT40Q6A162 AC132938.6-201ENST00000623828 1655 ntBASIC20.96■□□□□ 0.95
KRT40Q6A162 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.96■□□□□ 0.95
KRT40Q6A162 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
KRT40Q6A162 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT40Q6A162 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT40Q6A162 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT40Q6A162 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.96■□□□□ 0.95
KRT40Q6A162 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
KRT40Q6A162 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
KRT40Q6A162 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT40Q6A162 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
KRT40Q6A162 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
KRT40Q6A162 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
KRT40Q6A162 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
KRT40Q6A162 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.95■□□□□ 0.94
KRT40Q6A162 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.95■□□□□ 0.94
KRT40Q6A162 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.95■□□□□ 0.94
KRT40Q6A162 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.95■□□□□ 0.94
KRT40Q6A162 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.95■□□□□ 0.94
KRT40Q6A162 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.95■□□□□ 0.94
KRT40Q6A162 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
KRT40Q6A162 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT40Q6A162 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
KRT40Q6A162 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.94■□□□□ 0.94
KRT40Q6A162 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.94■□□□□ 0.94
KRT40Q6A162 AP000347.1-202ENST00000435868 847 ntBASIC20.94■□□□□ 0.94
KRT40Q6A162 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.94■□□□□ 0.94
KRT40Q6A162 AC069148.1-201ENST00000608741 768 ntBASIC20.94■□□□□ 0.94
KRT40Q6A162 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
KRT40Q6A162 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.94■□□□□ 0.94
KRT40Q6A162 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.94■□□□□ 0.94
KRT40Q6A162 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 AL391807.1-203ENST00000604392 2365 ntBASIC20.94■□□□□ 0.94
KRT40Q6A162 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
KRT40Q6A162 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
KRT40Q6A162 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.94■□□□□ 0.94
KRT40Q6A162 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
KRT40Q6A162 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms