Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
FOXA3P55318 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
FOXA3P55318 AC006015.1-201ENST00000429970 570 ntBASIC13.61□□□□□ -0.23
FOXA3P55318 OR2A1-AS1-201ENST00000462305 773 ntBASIC13.61□□□□□ -0.23
FOXA3P55318 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC13.61□□□□□ -0.23
FOXA3P55318 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC13.61□□□□□ -0.23
FOXA3P55318 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC13.61□□□□□ -0.23
FOXA3P55318 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC13.61□□□□□ -0.23
FOXA3P55318 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
FOXA3P55318 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA3P55318 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
FOXA3P55318 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA3P55318 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA3P55318 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.6□□□□□ -0.23
FOXA3P55318 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
FOXA3P55318 SERPINH1P1-201ENST00000419794 1249 ntBASIC13.6□□□□□ -0.23
FOXA3P55318 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA3P55318 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 PHB2-213ENST00000546111 858 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA3P55318 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA3P55318 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA3P55318 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
FOXA3P55318 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA3P55318 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
FOXA3P55318 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA3P55318 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA3P55318 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA3P55318 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA3P55318 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA3P55318 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA3P55318 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA3P55318 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA3P55318 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
FOXA3P55318 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA3P55318 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA3P55318 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA3P55318 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA3P55318 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA3P55318 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
FOXA3P55318 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms