Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SOX3P41225 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SOX3P41225 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX3P41225 AC005332.1-201ENST00000577698 1310 ntBASIC17.04■□□□□ 0.32
SOX3P41225 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SOX3P41225 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.04■□□□□ 0.32
SOX3P41225 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 AC079602.3-201ENST00000623931 403 ntBASIC17.04■□□□□ 0.32
SOX3P41225 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SOX3P41225 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.04■□□□□ 0.32
SOX3P41225 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SOX3P41225 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 KRT8P50-201ENST00000562022 1438 ntBASIC17.04■□□□□ 0.32
SOX3P41225 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX3P41225 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.03■□□□□ 0.32
SOX3P41225 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX3P41225 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SOX3P41225 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SOX3P41225 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.03■□□□□ 0.32
SOX3P41225 SPDYE13P-201ENST00000445314 798 ntBASIC17.03■□□□□ 0.32
SOX3P41225 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.03■□□□□ 0.32
SOX3P41225 AL136038.3-201ENST00000561909 1096 ntBASIC17.03■□□□□ 0.32
SOX3P41225 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.03■□□□□ 0.32
SOX3P41225 AP000550.4-202ENST00000639755 178 ntBASIC17.03■□□□□ 0.32
SOX3P41225 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SOX3P41225 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.03■□□□□ 0.32
SOX3P41225 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.03■□□□□ 0.32
SOX3P41225 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX3P41225 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
SOX3P41225 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SOX3P41225 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.03■□□□□ 0.32
SOX3P41225 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.03■□□□□ 0.32
SOX3P41225 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SOX3P41225 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.03■□□□□ 0.32
SOX3P41225 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX3P41225 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SOX3P41225 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX3P41225 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX3P41225 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.02■□□□□ 0.32
SOX3P41225 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SOX3P41225 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.02■□□□□ 0.32
SOX3P41225 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX3P41225 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.02■□□□□ 0.32
SOX3P41225 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SOX3P41225 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX3P41225 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SOX3P41225 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX3P41225 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX3P41225 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SOX3P41225 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.02■□□□□ 0.32
SOX3P41225 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX3P41225 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX3P41225 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.02■□□□□ 0.32
SOX3P41225 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.02■□□□□ 0.32
SOX3P41225 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.02■□□□□ 0.32
SOX3P41225 KRT18P41-201ENST00000518924 1277 ntBASIC17.02■□□□□ 0.32
SOX3P41225 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.02■□□□□ 0.32
SOX3P41225 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX3P41225 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SOX3P41225 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.02■□□□□ 0.32
SOX3P41225 AL136038.4-201ENST00000603606 1261 ntBASIC17.02■□□□□ 0.32
SOX3P41225 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.02■□□□□ 0.32
SOX3P41225 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms