Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
HOXD3P31249 GMCL1P1-201ENST00000463439 1581 ntBASIC14□□□□□ -0.17
HOXD3P31249 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC13.99□□□□□ -0.17
HOXD3P31249 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 LINC00167-201ENST00000530583 1419 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
HOXD3P31249 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC13.99□□□□□ -0.17
HOXD3P31249 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD3P31249 IGHGP-201ENST00000390555 1178 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 DRAXINP1-201ENST00000437611 948 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 AC079781.3-201ENST00000449110 356 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 AC104819.1-201ENST00000504587 486 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 AC079776.4-201ENST00000511039 504 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD3P31249 AC074051.2-201ENST00000565115 352 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 GPR32P1-201ENST00000601788 811 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 GXYLT1P4-201ENST00000613576 1192 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD3P31249 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HOXD3P31249 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 AL138781.2-201ENST00000617896 1843 ntBASIC13.99□□□□□ -0.17
HOXD3P31249 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD3P31249 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD3P31249 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD3P31249 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
HOXD3P31249 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD3P31249 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.98□□□□□ -0.17
HOXD3P31249 KRT18P31-201ENST00000506277 1292 ntBASIC13.98□□□□□ -0.17
HOXD3P31249 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD3P31249 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 AC012615.1-201ENST00000565797 1299 ntBASIC13.98□□□□□ -0.17
HOXD3P31249 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC13.98□□□□□ -0.17
HOXD3P31249 AL390719.2-201ENST00000606993 987 ntBASIC13.98□□□□□ -0.17
HOXD3P31249 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
HOXD3P31249 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC13.98□□□□□ -0.17
HOXD3P31249 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
HOXD3P31249 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HOXD3P31249 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD3P31249 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD3P31249 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXD3P31249 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD3P31249 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXD3P31249 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms