Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDH3P22223 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH3P22223 TNRC18P3-201ENST00000441896 2691 ntBASIC17.75■□□□□ 0.43
CDH3P22223 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.74■□□□□ 0.43
CDH3P22223 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 AC068880.1-201ENST00000507289 2297 ntBASIC17.74■□□□□ 0.43
CDH3P22223 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
CDH3P22223 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CDH3P22223 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CDH3P22223 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH3P22223 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH3P22223 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH3P22223 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.74■□□□□ 0.43
CDH3P22223 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 PVRIG2P-201ENST00000435460 978 ntBASIC17.74■□□□□ 0.43
CDH3P22223 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
CDH3P22223 AC069148.1-201ENST00000608741 768 ntBASIC17.74■□□□□ 0.43
CDH3P22223 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.74■□□□□ 0.43
CDH3P22223 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDH3P22223 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.74■□□□□ 0.43
CDH3P22223 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CDH3P22223 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
CDH3P22223 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CDH3P22223 AL139384.1-201ENST00000612143 3047 ntBASIC17.73■□□□□ 0.43
CDH3P22223 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CDH3P22223 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.73■□□□□ 0.43
CDH3P22223 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.73■□□□□ 0.43
CDH3P22223 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CDH3P22223 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CDH3P22223 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.73■□□□□ 0.43
CDH3P22223 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CDH3P22223 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.73■□□□□ 0.43
CDH3P22223 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.73■□□□□ 0.43
CDH3P22223 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH3P22223 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.72■□□□□ 0.43
CDH3P22223 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH3P22223 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CDH3P22223 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH3P22223 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
CDH3P22223 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CDH3P22223 AL162741.1-201ENST00000565563 1558 ntBASIC17.72■□□□□ 0.43
CDH3P22223 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH3P22223 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
CDH3P22223 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.72■□□□□ 0.43
CDH3P22223 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.72■□□□□ 0.43
CDH3P22223 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.72■□□□□ 0.43
CDH3P22223 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH3P22223 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH3P22223 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 AL163051.1-201ENST00000569214 1512 ntBASIC17.72■□□□□ 0.43
CDH3P22223 AC112777.1-201ENST00000540175 1423 ntBASIC17.72■□□□□ 0.43
CDH3P22223 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH3P22223 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH3P22223 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH3P22223 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH3P22223 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH3P22223 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms