Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
VPS4BO75351 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS4BO75351 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4BO75351 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS4BO75351 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
VPS4BO75351 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4BO75351 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS4BO75351 PCED1CP-201ENST00000419887 785 ntBASIC17.77■□□□□ 0.44
VPS4BO75351 CCR12P-201ENST00000446203 998 ntBASIC17.77■□□□□ 0.44
VPS4BO75351 AC011506.1-201ENST00000474329 610 ntBASIC17.77■□□□□ 0.44
VPS4BO75351 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS4BO75351 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS4BO75351 AC008622.2-201ENST00000617006 1229 ntBASIC17.77■□□□□ 0.44
VPS4BO75351 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS4BO75351 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4BO75351 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4BO75351 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.77■□□□□ 0.43
VPS4BO75351 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
VPS4BO75351 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
VPS4BO75351 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.77■□□□□ 0.43
VPS4BO75351 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS4BO75351 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
VPS4BO75351 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VPS4BO75351 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS4BO75351 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS4BO75351 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VPS4BO75351 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS4BO75351 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VPS4BO75351 KRT8P50-201ENST00000562022 1438 ntBASIC17.76■□□□□ 0.43
VPS4BO75351 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.76■□□□□ 0.43
VPS4BO75351 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS4BO75351 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS4BO75351 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS4BO75351 COX11P1-201ENST00000489116 835 ntBASIC17.76■□□□□ 0.43
VPS4BO75351 YBX1P2-201ENST00000489612 999 ntBASIC17.76■□□□□ 0.43
VPS4BO75351 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS4BO75351 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS4BO75351 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS4BO75351 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS4BO75351 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
VPS4BO75351 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
VPS4BO75351 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4BO75351 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS4BO75351 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
VPS4BO75351 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS4BO75351 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS4BO75351 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS4BO75351 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 IER3-202ENST00000376377 1350 ntBASIC17.75■□□□□ 0.43
VPS4BO75351 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
VPS4BO75351 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS4BO75351 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
VPS4BO75351 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS4BO75351 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4BO75351 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VPS4BO75351 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VPS4BO75351 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.74■□□□□ 0.43
VPS4BO75351 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS4BO75351 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS4BO75351 PHGDH-209ENST00000641074 1780 ntBASIC17.74■□□□□ 0.43
VPS4BO75351 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms