Protein–RNA interactions for Protein: O60287

URB1, Nucleolar pre-ribosomal-associated protein 1, humanhuman

Known RBP Predictions only

Length 2,271 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
URB1O60287 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
URB1O60287 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.08■□□□□ 0.33
URB1O60287 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.08■□□□□ 0.33
URB1O60287 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
URB1O60287 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
URB1O60287 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
URB1O60287 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.08■□□□□ 0.33
URB1O60287 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.08■□□□□ 0.33
URB1O60287 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
URB1O60287 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
URB1O60287 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
URB1O60287 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.08■□□□□ 0.32
URB1O60287 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.08■□□□□ 0.32
URB1O60287 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
URB1O60287 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.08■□□□□ 0.32
URB1O60287 HLA-J-202ENST00000469281 1241 ntBASIC17.08■□□□□ 0.32
URB1O60287 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
URB1O60287 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
URB1O60287 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.08■□□□□ 0.32
URB1O60287 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.08■□□□□ 0.32
URB1O60287 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.08■□□□□ 0.32
URB1O60287 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.08■□□□□ 0.32
URB1O60287 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
URB1O60287 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
URB1O60287 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 AC112777.1-201ENST00000540175 1423 ntBASIC17.07■□□□□ 0.32
URB1O60287 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
URB1O60287 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 AC002310.6-201ENST00000624451 1377 ntBASIC17.07■□□□□ 0.32
URB1O60287 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
URB1O60287 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.07■□□□□ 0.32
URB1O60287 SNHG9-202ENST00000564014 471 ntBASIC17.07■□□□□ 0.32
URB1O60287 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.07■□□□□ 0.32
URB1O60287 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.07■□□□□ 0.32
URB1O60287 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.07■□□□□ 0.32
URB1O60287 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
URB1O60287 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
URB1O60287 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 Z82202.1-201ENST00000623446 1880 ntBASIC17.07■□□□□ 0.32
URB1O60287 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
URB1O60287 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.07■□□□□ 0.32
URB1O60287 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.07■□□□□ 0.32
URB1O60287 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.07■□□□□ 0.32
URB1O60287 AC005829.1-201ENST00000570002 483 ntBASIC17.07■□□□□ 0.32
URB1O60287 AL138831.2-201ENST00000606564 490 ntBASIC17.07■□□□□ 0.32
URB1O60287 AL096865.1-201ENST00000606796 927 ntBASIC17.07■□□□□ 0.32
URB1O60287 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
URB1O60287 AL139288.1-201ENST00000623748 933 ntBASIC17.07■□□□□ 0.32
URB1O60287 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.07■□□□□ 0.32
URB1O60287 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
URB1O60287 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.06■□□□□ 0.32
URB1O60287 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
URB1O60287 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
URB1O60287 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.06■□□□□ 0.32
URB1O60287 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.06■□□□□ 0.32
URB1O60287 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.06■□□□□ 0.32
URB1O60287 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
URB1O60287 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.06■□□□□ 0.32
URB1O60287 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.06■□□□□ 0.32
URB1O60287 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.06■□□□□ 0.32
URB1O60287 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
URB1O60287 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.06■□□□□ 0.32
URB1O60287 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.06■□□□□ 0.32
URB1O60287 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms