Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.48■□□□□ 0.55
CBX4O00257 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.48■□□□□ 0.55
CBX4O00257 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
CBX4O00257 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 AL592071.1-201ENST00000611956 408 ntBASIC18.48■□□□□ 0.55
CBX4O00257 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 AL691432.3-201ENST00000621860 400 ntBASIC18.48■□□□□ 0.55
CBX4O00257 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.48■□□□□ 0.55
CBX4O00257 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 AC093677.2-201ENST00000600169 1863 ntBASIC18.48■□□□□ 0.55
CBX4O00257 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.47■□□□□ 0.55
CBX4O00257 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CBX4O00257 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.47■□□□□ 0.55
CBX4O00257 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CBX4O00257 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.47■□□□□ 0.55
CBX4O00257 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 AC246785.2-201ENST00000432512 513 ntBASIC18.47■□□□□ 0.55
CBX4O00257 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.47■□□□□ 0.55
CBX4O00257 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.47■□□□□ 0.55
CBX4O00257 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.47■□□□□ 0.55
CBX4O00257 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 AC090340.1-201ENST00000620778 4980 ntBASIC18.47■□□□□ 0.55
CBX4O00257 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
CBX4O00257 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 LINC00167-201ENST00000530583 1419 ntBASIC18.47■□□□□ 0.55
CBX4O00257 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.47■□□□□ 0.55
CBX4O00257 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CBX4O00257 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.46■□□□□ 0.55
CBX4O00257 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CBX4O00257 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.46■□□□□ 0.55
CBX4O00257 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 MIR3180-1-201ENST00000580374 94 ntBASIC18.46■□□□□ 0.55
CBX4O00257 MIR3180-3-201ENST00000584616 94 ntBASIC18.46■□□□□ 0.55
CBX4O00257 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
CBX4O00257 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.46■□□□□ 0.55
CBX4O00257 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CBX4O00257 AL096828.2-201ENST00000567259 1965 ntBASIC18.46■□□□□ 0.55
CBX4O00257 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
CBX4O00257 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
CBX4O00257 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.46■□□□□ 0.55
CBX4O00257 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CBX4O00257 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CBX4O00257 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms