Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 AL024508.2-201ENST00000607749 1894 ntBASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 KRT8P7-201ENST00000533003 1432 ntBASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM49D1C9J1S8 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM49D1C9J1S8 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM49D1C9J1S8 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TRIM49D1C9J1S8 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 AL355312.1-201ENST00000407115 2176 ntBASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 REXO1L10P-201ENST00000615707 1290 ntBASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 REXO1L12P-201ENST00000622156 912 ntBASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM49D1C9J1S8 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms