Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 TEX21P-204ENST00000641479 1693 ntBASIC13.93□□□□□ -0.18
COL6A5A8TX70 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 MED17-221ENST00000639724 2317 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 TUBB3P1-201ENST00000405796 1332 ntBASIC13.92□□□□□ -0.18
COL6A5A8TX70 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 AC008687.5-201ENST00000593746 558 ntBASIC13.92□□□□□ -0.18
COL6A5A8TX70 AL033527.4-201ENST00000641026 673 ntBASIC13.92□□□□□ -0.18
COL6A5A8TX70 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 SPDYE21P-201ENST00000413323 827 ntBASIC13.92□□□□□ -0.18
COL6A5A8TX70 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A5A8TX70 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A5A8TX70 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 TP73-202ENST00000354437 2140 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 HCG4-201ENST00000418983 998 ntBASIC13.91□□□□□ -0.18
COL6A5A8TX70 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 AC079776.1-201ENST00000401540 1152 ntBASIC13.91□□□□□ -0.18
COL6A5A8TX70 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 AC023141.13-201ENST00000604991 943 ntBASIC13.91□□□□□ -0.18
COL6A5A8TX70 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A5A8TX70 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
COL6A5A8TX70 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms