Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
PCDHB1Q9Y5F3 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHB1Q9Y5F3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHB1Q9Y5F3 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
PCDHB1Q9Y5F3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.76■■□□□ 1.55
PCDHB1Q9Y5F3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHB1Q9Y5F3 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
PCDHB1Q9Y5F3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.75■■□□□ 1.55
PCDHB1Q9Y5F3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.75■■□□□ 1.55
PCDHB1Q9Y5F3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.74■■□□□ 1.55
PCDHB1Q9Y5F3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHB1Q9Y5F3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.74■■□□□ 1.55
PCDHB1Q9Y5F3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHB1Q9Y5F3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHB1Q9Y5F3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHB1Q9Y5F3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHB1Q9Y5F3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
PCDHB1Q9Y5F3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
PCDHB1Q9Y5F3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHB1Q9Y5F3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHB1Q9Y5F3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHB1Q9Y5F3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.71■■□□□ 1.55
PCDHB1Q9Y5F3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHB1Q9Y5F3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHB1Q9Y5F3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHB1Q9Y5F3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHB1Q9Y5F3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHB1Q9Y5F3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC24.7■■□□□ 1.55
PCDHB1Q9Y5F3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHB1Q9Y5F3 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.7■■□□□ 1.54
PCDHB1Q9Y5F3 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.7■■□□□ 1.54
PCDHB1Q9Y5F3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
PCDHB1Q9Y5F3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHB1Q9Y5F3 AL033527.3-201ENST00000566366 1196 ntBASIC24.69■■□□□ 1.54
PCDHB1Q9Y5F3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
PCDHB1Q9Y5F3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHB1Q9Y5F3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHB1Q9Y5F3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.68■■□□□ 1.54
PCDHB1Q9Y5F3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
PCDHB1Q9Y5F3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHB1Q9Y5F3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHB1Q9Y5F3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHB1Q9Y5F3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.67■■□□□ 1.54
PCDHB1Q9Y5F3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHB1Q9Y5F3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.67■■□□□ 1.54
PCDHB1Q9Y5F3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
PCDHB1Q9Y5F3 AC148477.6-201ENST00000623746 465 ntBASIC24.67■■□□□ 1.54
PCDHB1Q9Y5F3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
PCDHB1Q9Y5F3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHB1Q9Y5F3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.66■■□□□ 1.54
PCDHB1Q9Y5F3 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
PCDHB1Q9Y5F3 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHB1Q9Y5F3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHB1Q9Y5F3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.65■■□□□ 1.54
PCDHB1Q9Y5F3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
PCDHB1Q9Y5F3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHB1Q9Y5F3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.65■■□□□ 1.54
PCDHB1Q9Y5F3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHB1Q9Y5F3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHB1Q9Y5F3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHB1Q9Y5F3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.64■■□□□ 1.54
PCDHB1Q9Y5F3 U85056.1-201ENST00000616429 682 ntBASIC24.64■■□□□ 1.54
PCDHB1Q9Y5F3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.64■■□□□ 1.53
PCDHB1Q9Y5F3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
PCDHB1Q9Y5F3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
PCDHB1Q9Y5F3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHB1Q9Y5F3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.63■■□□□ 1.53
PCDHB1Q9Y5F3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.63■■□□□ 1.53
PCDHB1Q9Y5F3 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
PCDHB1Q9Y5F3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
PCDHB1Q9Y5F3 WHAMMP3-201ENST00000611636 1609 ntBASIC24.62■■□□□ 1.53
PCDHB1Q9Y5F3 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.62■■□□□ 1.53
PCDHB1Q9Y5F3 AC060814.1-201ENST00000554326 538 ntBASIC24.62■■□□□ 1.53
PCDHB1Q9Y5F3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHB1Q9Y5F3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHB1Q9Y5F3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHB1Q9Y5F3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC24.61■■□□□ 1.53
PCDHB1Q9Y5F3 MIR219A2-201ENST00000608502 1504 ntBASIC24.61■■□□□ 1.53
PCDHB1Q9Y5F3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.61■■□□□ 1.53
PCDHB1Q9Y5F3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.61■■□□□ 1.53
PCDHB1Q9Y5F3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.61■■□□□ 1.53
PCDHB1Q9Y5F3 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHB1Q9Y5F3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHB1Q9Y5F3 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
PCDHB1Q9Y5F3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHB1Q9Y5F3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHB1Q9Y5F3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHB1Q9Y5F3 AL449106.1-201ENST00000608517 1980 ntBASIC24.6■■□□□ 1.53
PCDHB1Q9Y5F3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC24.59■■□□□ 1.53
PCDHB1Q9Y5F3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
PCDHB1Q9Y5F3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHB1Q9Y5F3 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHB1Q9Y5F3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
PCDHB1Q9Y5F3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC24.59■■□□□ 1.53
PCDHB1Q9Y5F3 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
PCDHB1Q9Y5F3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHB1Q9Y5F3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
PCDHB1Q9Y5F3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC24.58■■□□□ 1.52
PCDHB1Q9Y5F3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.52
PCDHB1Q9Y5F3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms