Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL21A1Q96P44 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL21A1Q96P44 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL21A1Q96P44 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL21A1Q96P44 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
COL21A1Q96P44 HLA-V-202ENST00000446817 847 ntBASIC23.26■■□□□ 1.31
COL21A1Q96P44 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL21A1Q96P44 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL21A1Q96P44 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL21A1Q96P44 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL21A1Q96P44 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL21A1Q96P44 MIR639-201ENST00000384974 98 ntBASIC23.25■■□□□ 1.31
COL21A1Q96P44 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
COL21A1Q96P44 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL21A1Q96P44 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL21A1Q96P44 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL21A1Q96P44 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.24■■□□□ 1.31
COL21A1Q96P44 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL21A1Q96P44 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.24■■□□□ 1.31
COL21A1Q96P44 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.24■■□□□ 1.31
COL21A1Q96P44 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL21A1Q96P44 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL21A1Q96P44 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.23■■□□□ 1.31
COL21A1Q96P44 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.23■■□□□ 1.31
COL21A1Q96P44 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL21A1Q96P44 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL21A1Q96P44 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.23■■□□□ 1.31
COL21A1Q96P44 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.23■■□□□ 1.31
COL21A1Q96P44 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL21A1Q96P44 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL21A1Q96P44 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.22■■□□□ 1.31
COL21A1Q96P44 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL21A1Q96P44 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
COL21A1Q96P44 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.21■■□□□ 1.31
COL21A1Q96P44 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.21■■□□□ 1.31
COL21A1Q96P44 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL21A1Q96P44 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
COL21A1Q96P44 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL21A1Q96P44 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL21A1Q96P44 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL21A1Q96P44 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
COL21A1Q96P44 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.2■■□□□ 1.3
COL21A1Q96P44 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.2■■□□□ 1.3
COL21A1Q96P44 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
COL21A1Q96P44 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL21A1Q96P44 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL21A1Q96P44 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL21A1Q96P44 AL449106.1-201ENST00000608517 1980 ntBASIC23.19■■□□□ 1.3
COL21A1Q96P44 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL21A1Q96P44 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
COL21A1Q96P44 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL21A1Q96P44 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
COL21A1Q96P44 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.18■■□□□ 1.3
COL21A1Q96P44 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL21A1Q96P44 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL21A1Q96P44 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
COL21A1Q96P44 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.17■■□□□ 1.3
COL21A1Q96P44 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL21A1Q96P44 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL21A1Q96P44 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL21A1Q96P44 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.16■■□□□ 1.3
COL21A1Q96P44 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL21A1Q96P44 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL21A1Q96P44 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
COL21A1Q96P44 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL21A1Q96P44 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
COL21A1Q96P44 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
COL21A1Q96P44 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.14■■□□□ 1.29
COL21A1Q96P44 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.14■■□□□ 1.29
COL21A1Q96P44 AC148477.6-201ENST00000623746 465 ntBASIC23.14■■□□□ 1.29
COL21A1Q96P44 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
COL21A1Q96P44 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL21A1Q96P44 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL21A1Q96P44 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
COL21A1Q96P44 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.13■■□□□ 1.29
COL21A1Q96P44 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
COL21A1Q96P44 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL21A1Q96P44 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL21A1Q96P44 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL21A1Q96P44 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.13■■□□□ 1.29
COL21A1Q96P44 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL21A1Q96P44 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL21A1Q96P44 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL21A1Q96P44 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL21A1Q96P44 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.12■■□□□ 1.29
COL21A1Q96P44 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL21A1Q96P44 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL21A1Q96P44 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
COL21A1Q96P44 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.11■■□□□ 1.29
COL21A1Q96P44 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.11■■□□□ 1.29
COL21A1Q96P44 MIR219A2-201ENST00000608502 1504 ntBASIC23.1■■□□□ 1.29
COL21A1Q96P44 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.1■■□□□ 1.29
COL21A1Q96P44 MIR4449-201ENST00000578365 66 ntBASIC23.1■■□□□ 1.29
COL21A1Q96P44 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.1■■□□□ 1.29
COL21A1Q96P44 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
COL21A1Q96P44 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.08■■□□□ 1.29
COL21A1Q96P44 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL21A1Q96P44 AC091060.1-201ENST00000623524 1766 ntBASIC23.06■■□□□ 1.28
COL21A1Q96P44 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL21A1Q96P44 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms