Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC142472.1-201ENST00000612013 1741 ntBASIC23.91■■□□□ 1.42
CLDN9O95484 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CLDN9O95484 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CLDN9O95484 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.91■■□□□ 1.42
CLDN9O95484 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.91■■□□□ 1.42
CLDN9O95484 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.91■■□□□ 1.42
CLDN9O95484 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.91■■□□□ 1.42
CLDN9O95484 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
CLDN9O95484 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CLDN9O95484 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CLDN9O95484 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CLDN9O95484 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CLDN9O95484 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.9■■□□□ 1.42
CLDN9O95484 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CLDN9O95484 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.9■■□□□ 1.42
CLDN9O95484 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CLDN9O95484 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
CLDN9O95484 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.89■■□□□ 1.41
CLDN9O95484 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.89■■□□□ 1.41
CLDN9O95484 AC091060.1-201ENST00000623524 1766 ntBASIC23.88■■□□□ 1.41
CLDN9O95484 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.88■■□□□ 1.41
CLDN9O95484 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CLDN9O95484 AC148477.6-201ENST00000623746 465 ntBASIC23.88■■□□□ 1.41
CLDN9O95484 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CLDN9O95484 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CLDN9O95484 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CLDN9O95484 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CLDN9O95484 MIR219A2-201ENST00000608502 1504 ntBASIC23.87■■□□□ 1.41
CLDN9O95484 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CLDN9O95484 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
CLDN9O95484 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CLDN9O95484 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CLDN9O95484 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CLDN9O95484 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.86■■□□□ 1.41
CLDN9O95484 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CLDN9O95484 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.86■■□□□ 1.41
CLDN9O95484 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.85■■□□□ 1.41
CLDN9O95484 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.85■■□□□ 1.41
CLDN9O95484 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.85■■□□□ 1.41
CLDN9O95484 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CLDN9O95484 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CLDN9O95484 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLDN9O95484 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.84■■□□□ 1.41
CLDN9O95484 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.84■■□□□ 1.41
CLDN9O95484 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CLDN9O95484 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLDN9O95484 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
CLDN9O95484 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CLDN9O95484 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CLDN9O95484 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.83■■□□□ 1.41
CLDN9O95484 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.83■■□□□ 1.41
CLDN9O95484 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CLDN9O95484 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.83■■□□□ 1.4
CLDN9O95484 HLA-V-202ENST00000446817 847 ntBASIC23.82■■□□□ 1.4
CLDN9O95484 CR559946.2-201ENST00000623684 991 ntBASIC23.82■■□□□ 1.4
CLDN9O95484 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLDN9O95484 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CLDN9O95484 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CLDN9O95484 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CLDN9O95484 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLDN9O95484 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLDN9O95484 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.8■■□□□ 1.4
CLDN9O95484 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLDN9O95484 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
CLDN9O95484 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLDN9O95484 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.79■■□□□ 1.4
CLDN9O95484 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.79■■□□□ 1.4
CLDN9O95484 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
CLDN9O95484 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLDN9O95484 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
CLDN9O95484 AC145676.1-201ENST00000514988 2004 ntBASIC23.79■■□□□ 1.4
CLDN9O95484 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLDN9O95484 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.78■■□□□ 1.4
CLDN9O95484 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CLDN9O95484 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.78■■□□□ 1.4
CLDN9O95484 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CLDN9O95484 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CLDN9O95484 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CLDN9O95484 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
CLDN9O95484 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
CLDN9O95484 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CLDN9O95484 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
CLDN9O95484 MIR3648-2-201ENST00000581792 180 ntBASIC23.77■■□□□ 1.4
CLDN9O95484 MIR3648-1-201ENST00000615959 180 ntBASIC23.77■■□□□ 1.4
CLDN9O95484 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.77■■□□□ 1.4
CLDN9O95484 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.77■■□□□ 1.4
CLDN9O95484 AC092803.2-201ENST00000564287 1899 ntBASIC23.77■■□□□ 1.4
CLDN9O95484 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CLDN9O95484 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.76■■□□□ 1.39
CLDN9O95484 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.76■■□□□ 1.39
CLDN9O95484 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CLDN9O95484 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CLDN9O95484 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.76■■□□□ 1.39
CLDN9O95484 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CLDN9O95484 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CLDN9O95484 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CLDN9O95484 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.74■■□□□ 1.39
CLDN9O95484 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CLDN9O95484 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CLDN9O95484 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms