Protein–RNA interactions for Protein: O75379

VAMP4, Vesicle-associated membrane protein 4, humanhuman

Predictions only

Length 141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4O75379 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC31.98■■■□□ 2.71
VAMP4O75379 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.97■■■□□ 2.71
VAMP4O75379 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
VAMP4O75379 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.96■■■□□ 2.71
VAMP4O75379 GPX1-201ENST00000419349 1106 ntBASIC31.96■■■□□ 2.71
VAMP4O75379 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.95■■■□□ 2.71
VAMP4O75379 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
VAMP4O75379 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.95■■■□□ 2.71
VAMP4O75379 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
VAMP4O75379 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
VAMP4O75379 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
VAMP4O75379 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
VAMP4O75379 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC31.93■■■□□ 2.7
VAMP4O75379 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
VAMP4O75379 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.93■■■□□ 2.7
VAMP4O75379 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
VAMP4O75379 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.92■■■□□ 2.7
VAMP4O75379 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
VAMP4O75379 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
VAMP4O75379 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC31.91■■■□□ 2.7
VAMP4O75379 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.91■■■□□ 2.7
VAMP4O75379 AL157400.5-201ENST00000507624 621 ntBASIC31.91■■■□□ 2.7
VAMP4O75379 AC126177.7-201ENST00000547904 679 ntBASIC31.91■■■□□ 2.7
VAMP4O75379 HSD17B1P1-201ENST00000590052 955 ntBASIC31.91■■■□□ 2.7
VAMP4O75379 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
VAMP4O75379 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
VAMP4O75379 AC092296.2-201ENST00000589470 999 ntBASIC31.9■■■□□ 2.7
VAMP4O75379 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
VAMP4O75379 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
VAMP4O75379 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
VAMP4O75379 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.89■■■□□ 2.7
VAMP4O75379 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
VAMP4O75379 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
VAMP4O75379 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.88■■■□□ 2.69
VAMP4O75379 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
VAMP4O75379 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.88■■■□□ 2.69
VAMP4O75379 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
VAMP4O75379 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
VAMP4O75379 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
VAMP4O75379 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.87■■■□□ 2.69
VAMP4O75379 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
VAMP4O75379 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
VAMP4O75379 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
VAMP4O75379 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.86■■■□□ 2.69
VAMP4O75379 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC31.85■■■□□ 2.69
VAMP4O75379 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
VAMP4O75379 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
VAMP4O75379 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
VAMP4O75379 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC31.84■■■□□ 2.69
VAMP4O75379 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
VAMP4O75379 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
VAMP4O75379 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
VAMP4O75379 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.83■■■□□ 2.69
VAMP4O75379 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.69
VAMP4O75379 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
VAMP4O75379 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.82■■■□□ 2.68
VAMP4O75379 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
VAMP4O75379 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC31.82■■■□□ 2.68
VAMP4O75379 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC31.81■■■□□ 2.68
VAMP4O75379 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
VAMP4O75379 AL121749.1-202ENST00000609313 2153 ntBASIC31.8■■■□□ 2.68
VAMP4O75379 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
VAMP4O75379 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC31.8■■■□□ 2.68
VAMP4O75379 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
VAMP4O75379 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
VAMP4O75379 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC31.79■■■□□ 2.68
VAMP4O75379 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
VAMP4O75379 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC31.79■■■□□ 2.68
VAMP4O75379 AL359504.2-201ENST00000605506 1601 ntBASIC31.78■■■□□ 2.68
VAMP4O75379 RNF126P1-201ENST00000567452 1320 ntBASIC31.78■■■□□ 2.68
VAMP4O75379 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
VAMP4O75379 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
VAMP4O75379 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC31.77■■■□□ 2.68
VAMP4O75379 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.77■■■□□ 2.68
VAMP4O75379 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
VAMP4O75379 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
VAMP4O75379 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
VAMP4O75379 ECEL1P2-201ENST00000461596 1295 ntBASIC31.77■■■□□ 2.68
VAMP4O75379 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.77■■■□□ 2.68
VAMP4O75379 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.76■■■□□ 2.68
VAMP4O75379 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.76■■■□□ 2.67
VAMP4O75379 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
VAMP4O75379 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
VAMP4O75379 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
VAMP4O75379 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.74■■■□□ 2.67
VAMP4O75379 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.74■■■□□ 2.67
VAMP4O75379 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC31.74■■■□□ 2.67
VAMP4O75379 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.73■■■□□ 2.67
VAMP4O75379 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
VAMP4O75379 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.73■■■□□ 2.67
VAMP4O75379 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC31.73■■■□□ 2.67
VAMP4O75379 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
VAMP4O75379 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
VAMP4O75379 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
VAMP4O75379 AC025884.2-201ENST00000553429 711 ntBASIC31.72■■■□□ 2.67
VAMP4O75379 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
VAMP4O75379 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.71■■■□□ 2.67
VAMP4O75379 AP004609.3-201ENST00000610705 1884 ntBASIC31.71■■■□□ 2.67
VAMP4O75379 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.71■■■□□ 2.67
VAMP4O75379 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms