Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.72■■□□□ 1.07
SGCEO43556 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SGCEO43556 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.71■■□□□ 1.07
SGCEO43556 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SGCEO43556 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SGCEO43556 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.71■■□□□ 1.07
SGCEO43556 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SGCEO43556 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.71■■□□□ 1.07
SGCEO43556 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SGCEO43556 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SGCEO43556 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SGCEO43556 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.7■■□□□ 1.06
SGCEO43556 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.7■■□□□ 1.06
SGCEO43556 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SGCEO43556 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.7■■□□□ 1.06
SGCEO43556 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SGCEO43556 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SGCEO43556 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SGCEO43556 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SGCEO43556 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SGCEO43556 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SGCEO43556 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.69■■□□□ 1.06
SGCEO43556 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.69■■□□□ 1.06
SGCEO43556 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SGCEO43556 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SGCEO43556 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SGCEO43556 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SGCEO43556 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SGCEO43556 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
SGCEO43556 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SGCEO43556 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.67■■□□□ 1.06
SGCEO43556 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.67■■□□□ 1.06
SGCEO43556 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
SGCEO43556 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SGCEO43556 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SGCEO43556 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SGCEO43556 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SGCEO43556 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SGCEO43556 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SGCEO43556 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SGCEO43556 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.65■■□□□ 1.06
SGCEO43556 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SGCEO43556 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.65■■□□□ 1.06
SGCEO43556 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SGCEO43556 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.65■■□□□ 1.06
SGCEO43556 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SGCEO43556 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SGCEO43556 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SGCEO43556 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SGCEO43556 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SGCEO43556 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.64■■□□□ 1.06
SGCEO43556 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SGCEO43556 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
SGCEO43556 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SGCEO43556 AP004609.3-201ENST00000610705 1884 ntBASIC21.64■■□□□ 1.05
SGCEO43556 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SGCEO43556 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SGCEO43556 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SGCEO43556 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SGCEO43556 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.63■■□□□ 1.05
SGCEO43556 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.63■■□□□ 1.05
SGCEO43556 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SGCEO43556 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.62■■□□□ 1.05
SGCEO43556 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SGCEO43556 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SGCEO43556 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SGCEO43556 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.61■■□□□ 1.05
SGCEO43556 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SGCEO43556 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SGCEO43556 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SGCEO43556 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
SGCEO43556 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SGCEO43556 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.6■■□□□ 1.05
SGCEO43556 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SGCEO43556 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.6■■□□□ 1.05
SGCEO43556 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.6■■□□□ 1.05
SGCEO43556 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SGCEO43556 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.59■■□□□ 1.05
SGCEO43556 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SGCEO43556 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SGCEO43556 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SGCEO43556 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SGCEO43556 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SGCEO43556 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SGCEO43556 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SGCEO43556 AC142472.1-201ENST00000612013 1741 ntBASIC21.58■■□□□ 1.05
SGCEO43556 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SGCEO43556 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.57■■□□□ 1.04
SGCEO43556 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SGCEO43556 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.57■■□□□ 1.04
SGCEO43556 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SGCEO43556 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SGCEO43556 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SGCEO43556 AL359258.2-201ENST00000564063 1566 ntBASIC21.57■■□□□ 1.04
SGCEO43556 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SGCEO43556 MIR639-201ENST00000384974 98 ntBASIC21.56■■□□□ 1.04
SGCEO43556 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.56■■□□□ 1.04
SGCEO43556 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SGCEO43556 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SGCEO43556 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms