Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ECEL1P3-201ENST00000427961 737 ntBASIC14.68□□□□□ -0.06
FOXA2Q9Y261 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 LTB4R2-202ENST00000528054 3092 ntBASIC14.68□□□□□ -0.06
FOXA2Q9Y261 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 UROS-202ENST00000368778 1556 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 AL137013.1-201ENST00000432946 1228 ntBASIC14.67□□□□□ -0.06
FOXA2Q9Y261 AC009065.1-201ENST00000564055 1225 ntBASIC14.67□□□□□ -0.06
FOXA2Q9Y261 WWOX-216ENST00000569818 525 ntBASIC14.67□□□□□ -0.06
FOXA2Q9Y261 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 CR769767.2-201ENST00000622735 460 ntBASIC14.67□□□□□ -0.06
FOXA2Q9Y261 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
FOXA2Q9Y261 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 AP000523.1-201ENST00000398242 1049 ntBASIC14.66□□□□□ -0.06
FOXA2Q9Y261 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 AC093010.1-201ENST00000473625 1624 ntBASIC14.66□□□□□ -0.06
FOXA2Q9Y261 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA2Q9Y261 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms