Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CDX2Q99626 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.83■□□□□ 0.6
CDX2Q99626 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.83■□□□□ 0.6
CDX2Q99626 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CDX2Q99626 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.82■□□□□ 0.6
CDX2Q99626 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.82■□□□□ 0.6
CDX2Q99626 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.82■□□□□ 0.6
CDX2Q99626 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.82■□□□□ 0.6
CDX2Q99626 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CDX2Q99626 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.82■□□□□ 0.6
CDX2Q99626 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.82■□□□□ 0.6
CDX2Q99626 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.82■□□□□ 0.6
CDX2Q99626 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.82■□□□□ 0.6
CDX2Q99626 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.82■□□□□ 0.6
CDX2Q99626 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.82■□□□□ 0.6
CDX2Q99626 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.82■□□□□ 0.6
CDX2Q99626 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.82■□□□□ 0.6
CDX2Q99626 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.82■□□□□ 0.6
CDX2Q99626 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDX2Q99626 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.82■□□□□ 0.6
CDX2Q99626 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.81■□□□□ 0.6
CDX2Q99626 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 ARSEP1-201ENST00000420443 635 ntBASIC18.81■□□□□ 0.6
CDX2Q99626 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.81■□□□□ 0.6
CDX2Q99626 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.81■□□□□ 0.6
CDX2Q99626 AL596325.1-201ENST00000563991 1082 ntBASIC18.81■□□□□ 0.6
CDX2Q99626 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CDX2Q99626 AC068137.2-201ENST00000605408 478 ntBASIC18.81■□□□□ 0.6
CDX2Q99626 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.81■□□□□ 0.6
CDX2Q99626 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.81■□□□□ 0.6
CDX2Q99626 NCF1C-201ENST00000438382 1427 ntBASIC18.81■□□□□ 0.6
CDX2Q99626 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX2Q99626 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CDX2Q99626 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
CDX2Q99626 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.81■□□□□ 0.6
CDX2Q99626 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 TUBB3P1-201ENST00000405796 1332 ntBASIC18.8■□□□□ 0.6
CDX2Q99626 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.8■□□□□ 0.6
CDX2Q99626 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.8■□□□□ 0.6
CDX2Q99626 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.8■□□□□ 0.6
CDX2Q99626 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
CDX2Q99626 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.8■□□□□ 0.6
CDX2Q99626 AC025048.6-201ENST00000634326 1161 ntBASIC18.8■□□□□ 0.6
CDX2Q99626 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.8■□□□□ 0.6
CDX2Q99626 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDX2Q99626 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX2Q99626 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.79■□□□□ 0.6
CDX2Q99626 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CDX2Q99626 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.79■□□□□ 0.6
CDX2Q99626 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.79■□□□□ 0.6
CDX2Q99626 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.79■□□□□ 0.6
CDX2Q99626 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.79■□□□□ 0.6
CDX2Q99626 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 AL020989.1-201ENST00000422979 469 ntBASIC18.79■□□□□ 0.6
CDX2Q99626 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.79■□□□□ 0.6
CDX2Q99626 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
CDX2Q99626 SLC25A39P2-201ENST00000537614 270 ntBASIC18.79■□□□□ 0.6
CDX2Q99626 OR7E47P-204ENST00000575924 449 ntBASIC18.79■□□□□ 0.6
CDX2Q99626 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.79■□□□□ 0.6
CDX2Q99626 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
CDX2Q99626 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CDX2Q99626 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 SDHAP2-201ENST00000455183 2001 ntBASIC18.79■□□□□ 0.6
CDX2Q99626 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX2Q99626 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDX2Q99626 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms