Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 KRT89P-201ENST00000620027 1478 ntBASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 SLC25A6P5-201ENST00000435663 894 ntBASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 KRT18P38-201ENST00000449496 1282 ntBASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 AL359075.1-203ENST00000462729 1002 ntBASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 AC092597.1-201ENST00000487352 616 ntBASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 AC113404.2-201ENST00000507884 177 ntBASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC65Q8IXS2 AP000997.3-201ENST00000623333 2250 ntBASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 TMPOP1-202ENST00000424642 1267 ntBASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 AC008764.6-201ENST00000595909 2069 ntBASIC20.11■□□□□ 0.81
CCDC65Q8IXS2 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 AC063952.2-201ENST00000498792 1227 ntBASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms