Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATL3Q6DD88 AC133963.1-201ENST00000504166 1679 ntBASIC20.69■□□□□ 0.9
ATL3Q6DD88 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATL3Q6DD88 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATL3Q6DD88 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATL3Q6DD88 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATL3Q6DD88 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATL3Q6DD88 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATL3Q6DD88 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
ATL3Q6DD88 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.69■□□□□ 0.9
ATL3Q6DD88 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 AL138688.1-201ENST00000624851 1594 ntBASIC20.68■□□□□ 0.9
ATL3Q6DD88 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 AC090340.1-201ENST00000620778 4980 ntBASIC20.68■□□□□ 0.9
ATL3Q6DD88 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 INGX-201ENST00000359239 846 ntBASIC20.68■□□□□ 0.9
ATL3Q6DD88 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 PVRIG2P-201ENST00000435460 978 ntBASIC20.68■□□□□ 0.9
ATL3Q6DD88 AC009947.2-201ENST00000444014 672 ntBASIC20.68■□□□□ 0.9
ATL3Q6DD88 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 AC113404.2-201ENST00000507884 177 ntBASIC20.68■□□□□ 0.9
ATL3Q6DD88 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 AC024243.1-201ENST00000609234 778 ntBASIC20.68■□□□□ 0.9
ATL3Q6DD88 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.68■□□□□ 0.9
ATL3Q6DD88 LINC00167-201ENST00000530583 1419 ntBASIC20.68■□□□□ 0.9
ATL3Q6DD88 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATL3Q6DD88 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.67■□□□□ 0.9
ATL3Q6DD88 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATL3Q6DD88 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
ATL3Q6DD88 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 AC139713.2-201ENST00000641328 2723 ntBASIC20.66■□□□□ 0.9
ATL3Q6DD88 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ATL3Q6DD88 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.66■□□□□ 0.9
ATL3Q6DD88 HMGA1P5-201ENST00000412453 271 ntBASIC20.66■□□□□ 0.9
ATL3Q6DD88 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.66■□□□□ 0.9
ATL3Q6DD88 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 AC010947.1-201ENST00000623454 693 ntBASIC20.66■□□□□ 0.9
ATL3Q6DD88 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.66■□□□□ 0.9
ATL3Q6DD88 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.66■□□□□ 0.9
ATL3Q6DD88 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.66■□□□□ 0.9
ATL3Q6DD88 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.66■□□□□ 0.9
ATL3Q6DD88 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATL3Q6DD88 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
ATL3Q6DD88 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms