Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC11.15□□□□□ -0.62
HSPG2P98160 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC11.15□□□□□ -0.62
HSPG2P98160 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC11.15□□□□□ -0.62
HSPG2P98160 AC025580.3-201ENST00000617932 1424 ntBASIC11.15□□□□□ -0.62
HSPG2P98160 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC11.15□□□□□ -0.63
HSPG2P98160 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
HSPG2P98160 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
HSPG2P98160 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
HSPG2P98160 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC11.14□□□□□ -0.63
HSPG2P98160 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC11.14□□□□□ -0.63
HSPG2P98160 NABP1-203ENST00000409510 843 ntTSL 5 BASIC11.14□□□□□ -0.63
HSPG2P98160 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC11.14□□□□□ -0.63
HSPG2P98160 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC11.14□□□□□ -0.63
HSPG2P98160 AC068587.9-201ENST00000641814 219 ntBASIC11.14□□□□□ -0.63
HSPG2P98160 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 FP475955.4-201ENST00000623131 1990 ntBASIC11.14□□□□□ -0.63
HSPG2P98160 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC11.14□□□□□ -0.63
HSPG2P98160 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC11.14□□□□□ -0.63
HSPG2P98160 FO538757.1-201ENST00000623083 1397 ntBASIC11.14□□□□□ -0.63
HSPG2P98160 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
HSPG2P98160 SPDYE22P-201ENST00000582158 798 ntBASIC11.14□□□□□ -0.63
HSPG2P98160 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HSPG2P98160 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC11.14□□□□□ -0.63
HSPG2P98160 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
HSPG2P98160 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC11.14□□□□□ -0.63
HSPG2P98160 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC11.14□□□□□ -0.63
HSPG2P98160 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
HSPG2P98160 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
HSPG2P98160 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC11.14□□□□□ -0.63
HSPG2P98160 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
HSPG2P98160 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC11.14□□□□□ -0.63
HSPG2P98160 TCF3P1-201ENST00000423021 1937 ntBASIC11.14□□□□□ -0.63
HSPG2P98160 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
HSPG2P98160 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
HSPG2P98160 BASP1P1-201ENST00000430708 665 ntBASIC11.14□□□□□ -0.63
HSPG2P98160 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HSPG2P98160 AC099522.2-201ENST00000607001 744 ntBASIC11.14□□□□□ -0.63
HSPG2P98160 AC009093.7-201ENST00000623853 1223 ntBASIC11.14□□□□□ -0.63
HSPG2P98160 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC11.13□□□□□ -0.63
HSPG2P98160 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
HSPG2P98160 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC11.13□□□□□ -0.63
HSPG2P98160 FAM86GP-201ENST00000448322 971 ntBASIC11.13□□□□□ -0.63
HSPG2P98160 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC11.13□□□□□ -0.63
HSPG2P98160 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 AC009102.3-201ENST00000623118 1491 ntBASIC11.13□□□□□ -0.63
HSPG2P98160 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
HSPG2P98160 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 RPL30-202ENST00000396070 440 ntTSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 CENPM-205ENST00000404067 905 ntTSL 3 BASIC11.13□□□□□ -0.63
HSPG2P98160 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 ADM-208ENST00000534464 1640 ntTSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
HSPG2P98160 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
HSPG2P98160 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 U91328.1-201ENST00000437528 223 ntBASIC11.13□□□□□ -0.63
HSPG2P98160 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC11.13□□□□□ -0.63
HSPG2P98160 SMN2-210ENST00000511812 867 ntTSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 RPL28-209ENST00000560055 670 ntTSL 3 BASIC11.13□□□□□ -0.63
HSPG2P98160 AL033527.4-201ENST00000641026 673 ntBASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms