Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH11P55287 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CDH11P55287 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
CDH11P55287 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH11P55287 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH11P55287 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.63■□□□□ 0.25
CDH11P55287 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH11P55287 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH11P55287 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH11P55287 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.63■□□□□ 0.25
CDH11P55287 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH11P55287 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH11P55287 AL049597.2-201ENST00000565575 961 ntBASIC16.63■□□□□ 0.25
CDH11P55287 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CDH11P55287 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH11P55287 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH11P55287 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.63■□□□□ 0.25
CDH11P55287 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH11P55287 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH11P55287 AC096733.2-201ENST00000609937 1394 ntBASIC16.63■□□□□ 0.25
CDH11P55287 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH11P55287 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CDH11P55287 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH11P55287 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH11P55287 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.62■□□□□ 0.25
CDH11P55287 ECEL1P2-202ENST00000465689 757 ntBASIC16.62■□□□□ 0.25
CDH11P55287 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CDH11P55287 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
CDH11P55287 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH11P55287 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH11P55287 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CDH11P55287 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CDH11P55287 AC139713.2-201ENST00000641328 2723 ntBASIC16.61■□□□□ 0.25
CDH11P55287 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH11P55287 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH11P55287 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.61■□□□□ 0.25
CDH11P55287 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH11P55287 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH11P55287 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH11P55287 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH11P55287 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CDH11P55287 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
CDH11P55287 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.61■□□□□ 0.25
CDH11P55287 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH11P55287 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CDH11P55287 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH11P55287 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.6■□□□□ 0.25
CDH11P55287 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CDH11P55287 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CDH11P55287 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 AC012313.1-201ENST00000593393 3059 ntBASIC16.6■□□□□ 0.25
CDH11P55287 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CDH11P55287 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CDH11P55287 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.6■□□□□ 0.25
CDH11P55287 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms