Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH4P55283 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH4P55283 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CDH4P55283 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH4P55283 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDH4P55283 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDH4P55283 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH4P55283 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH4P55283 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.49■□□□□ 0.55
CDH4P55283 AP000867.3-201ENST00000524675 377 ntBASIC18.49■□□□□ 0.55
CDH4P55283 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH4P55283 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.49■□□□□ 0.55
CDH4P55283 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.55
CDH4P55283 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
CDH4P55283 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH4P55283 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH4P55283 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH4P55283 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 AC138932.1-201ENST00000534164 6830 ntBASIC18.48■□□□□ 0.55
CDH4P55283 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH4P55283 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.48■□□□□ 0.55
CDH4P55283 AC112698.1-201ENST00000510299 916 ntBASIC18.48■□□□□ 0.55
CDH4P55283 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.48■□□□□ 0.55
CDH4P55283 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 AC012615.1-201ENST00000565797 1299 ntBASIC18.48■□□□□ 0.55
CDH4P55283 MIR3652-201ENST00000579335 131 ntBASIC18.48■□□□□ 0.55
CDH4P55283 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.48■□□□□ 0.55
CDH4P55283 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH4P55283 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH4P55283 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH4P55283 BICD1-207ENST00000551848 1962 ntBASIC18.48■□□□□ 0.55
CDH4P55283 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH4P55283 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CDH4P55283 AC022898.2-201ENST00000616822 1312 ntBASIC18.48■□□□□ 0.55
CDH4P55283 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH4P55283 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH4P55283 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH4P55283 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.47■□□□□ 0.55
CDH4P55283 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CDH4P55283 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.47■□□□□ 0.55
CDH4P55283 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.47■□□□□ 0.55
CDH4P55283 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CDH4P55283 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH4P55283 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH4P55283 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms