Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL4A2P08572 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.16■□□□□ 0.5
COL4A2P08572 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.16■□□□□ 0.5
COL4A2P08572 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A2P08572 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.16■□□□□ 0.5
COL4A2P08572 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A2P08572 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.16■□□□□ 0.5
COL4A2P08572 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A2P08572 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A2P08572 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A2P08572 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A2P08572 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A2P08572 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A2P08572 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A2P08572 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A2P08572 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A2P08572 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A2P08572 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 GMCL1P1-201ENST00000463439 1581 ntBASIC18.15■□□□□ 0.5
COL4A2P08572 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL4A2P08572 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL4A2P08572 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 AC018845.2-201ENST00000568326 409 ntBASIC18.15■□□□□ 0.5
COL4A2P08572 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 MTDHP5-201ENST00000598980 586 ntBASIC18.15■□□□□ 0.5
COL4A2P08572 AC027612.4-201ENST00000605371 583 ntBASIC18.15■□□□□ 0.5
COL4A2P08572 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
COL4A2P08572 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A2P08572 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.14■□□□□ 0.5
COL4A2P08572 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
COL4A2P08572 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL4A2P08572 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.14■□□□□ 0.49
COL4A2P08572 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL4A2P08572 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.14■□□□□ 0.49
COL4A2P08572 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.14■□□□□ 0.49
COL4A2P08572 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL4A2P08572 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL4A2P08572 AC211486.1-202ENST00000416371 468 ntBASIC18.14■□□□□ 0.49
COL4A2P08572 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.14■□□□□ 0.49
COL4A2P08572 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.14■□□□□ 0.49
COL4A2P08572 AC211476.1-201ENST00000503899 468 ntBASIC18.14■□□□□ 0.49
COL4A2P08572 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.14■□□□□ 0.49
COL4A2P08572 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.14■□□□□ 0.49
COL4A2P08572 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.14■□□□□ 0.49
COL4A2P08572 MIR3687-2-201ENST00000577708 61 ntBASIC18.14■□□□□ 0.49
COL4A2P08572 MIR3687-1-201ENST00000614492 61 ntBASIC18.14■□□□□ 0.49
COL4A2P08572 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
COL4A2P08572 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
COL4A2P08572 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.14■□□□□ 0.49
COL4A2P08572 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A2P08572 AC004817.3-201ENST00000602957 2129 ntBASIC18.13■□□□□ 0.49
COL4A2P08572 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A2P08572 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A2P08572 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A2P08572 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.13■□□□□ 0.49
COL4A2P08572 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.13■□□□□ 0.49
COL4A2P08572 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.13■□□□□ 0.49
COL4A2P08572 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.13■□□□□ 0.49
COL4A2P08572 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
COL4A2P08572 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A2P08572 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A2P08572 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A2P08572 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A2P08572 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.12■□□□□ 0.49
COL4A2P08572 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.12■□□□□ 0.49
COL4A2P08572 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms