Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CDKL5O76039 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CDKL5O76039 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.08■□□□□ 0.97
CDKL5O76039 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.08■□□□□ 0.97
CDKL5O76039 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CDKL5O76039 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CDKL5O76039 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.97
CDKL5O76039 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 HLA-F-220ENST00000434407 884 ntBASIC21.08■□□□□ 0.97
CDKL5O76039 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CDKL5O76039 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDKL5O76039 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.08■□□□□ 0.97
CDKL5O76039 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.08■□□□□ 0.97
CDKL5O76039 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CDKL5O76039 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDKL5O76039 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDKL5O76039 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
CDKL5O76039 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDKL5O76039 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDKL5O76039 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.07■□□□□ 0.96
CDKL5O76039 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.07■□□□□ 0.96
CDKL5O76039 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.07■□□□□ 0.96
CDKL5O76039 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.07■□□□□ 0.96
CDKL5O76039 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 AC132938.6-201ENST00000623828 1655 ntBASIC21.07■□□□□ 0.96
CDKL5O76039 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.07■□□□□ 0.96
CDKL5O76039 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.07■□□□□ 0.96
CDKL5O76039 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDKL5O76039 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CDKL5O76039 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.06■□□□□ 0.96
CDKL5O76039 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CDKL5O76039 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.06■□□□□ 0.96
CDKL5O76039 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.06■□□□□ 0.96
CDKL5O76039 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 AC092647.4-201ENST00000457211 535 ntBASIC21.06■□□□□ 0.96
CDKL5O76039 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.06■□□□□ 0.96
CDKL5O76039 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CDKL5O76039 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.06■□□□□ 0.96
CDKL5O76039 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.06■□□□□ 0.96
CDKL5O76039 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CDKL5O76039 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.06■□□□□ 0.96
CDKL5O76039 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms