Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 AP000593.1-201ENST00000393668 712 ntBASIC18.15■□□□□ 0.5
SHOX2O60902 AC026271.2-201ENST00000428091 497 ntBASIC18.15■□□□□ 0.5
SHOX2O60902 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.15■□□□□ 0.5
SHOX2O60902 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 HLA-J-201ENST00000462773 1622 ntBASIC18.15■□□□□ 0.5
SHOX2O60902 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.15■□□□□ 0.5
SHOX2O60902 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
SHOX2O60902 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.14■□□□□ 0.5
SHOX2O60902 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHOX2O60902 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
SHOX2O60902 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOX2O60902 RCC2P3-201ENST00000418112 1537 ntBASIC18.14■□□□□ 0.49
SHOX2O60902 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.14■□□□□ 0.49
SHOX2O60902 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.14■□□□□ 0.49
SHOX2O60902 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.14■□□□□ 0.49
SHOX2O60902 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOX2O60902 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOX2O60902 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SHOX2O60902 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SHOX2O60902 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.14■□□□□ 0.49
SHOX2O60902 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.14■□□□□ 0.49
SHOX2O60902 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.14■□□□□ 0.49
SHOX2O60902 RAP2CP1-201ENST00000605103 478 ntBASIC18.14■□□□□ 0.49
SHOX2O60902 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOX2O60902 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SHOX2O60902 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.14■□□□□ 0.49
SHOX2O60902 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOX2O60902 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOX2O60902 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SHOX2O60902 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SHOX2O60902 AC105917.1-201ENST00000506637 2539 ntBASIC18.13■□□□□ 0.49
SHOX2O60902 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.13■□□□□ 0.49
SHOX2O60902 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SHOX2O60902 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
SHOX2O60902 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.13■□□□□ 0.49
SHOX2O60902 AC231657.2-201ENST00000624556 255 ntBASIC18.13■□□□□ 0.49
SHOX2O60902 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.13■□□□□ 0.49
SHOX2O60902 HLA-A-209ENST00000638375 975 ntBASIC18.13■□□□□ 0.49
SHOX2O60902 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SHOX2O60902 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.13■□□□□ 0.49
SHOX2O60902 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.13■□□□□ 0.49
SHOX2O60902 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.13■□□□□ 0.49
SHOX2O60902 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHOX2O60902 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
SHOX2O60902 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.13■□□□□ 0.49
SHOX2O60902 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.12■□□□□ 0.49
SHOX2O60902 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 AC005052.1-201ENST00000625181 2492 ntBASIC18.12■□□□□ 0.49
SHOX2O60902 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.12■□□□□ 0.49
SHOX2O60902 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.12■□□□□ 0.49
SHOX2O60902 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.12■□□□□ 0.49
SHOX2O60902 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SHOX2O60902 AC004911.1-201ENST00000416316 871 ntBASIC18.12■□□□□ 0.49
SHOX2O60902 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SHOX2O60902 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SHOX2O60902 RARRES2P6-201ENST00000567333 442 ntBASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms