Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 CDV3-207ENST00000508481 661 ntTSL 3 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.76□□□□□ -0.05
TRAV40A0A0B4J280 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 LINC00602-201ENST00000629776 2065 ntBASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 AL353801.3-201ENST00000609898 542 ntBASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 AL031008.1-201ENST00000619963 541 ntBASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 KRT8P10-201ENST00000450021 1447 ntBASIC14.75□□□□□ -0.05
TRAV40A0A0B4J280 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 AC079781.3-201ENST00000449110 356 ntBASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
TRAV40A0A0B4J280 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms