Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 KRT18P65-201ENST00000439811 1286 ntBASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 MINOS1P3-201ENST00000457048 203 ntBASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 FAAHP1-202ENST00000446499 1238 ntBASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 ESPNP-201ENST00000270691 2015 ntBASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLCF1Q9UBD9 AC018445.3-201ENST00000624177 1945 ntBASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 NUS1P2-201ENST00000417358 873 ntBASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 MTCL1P1-201ENST00000446207 792 ntBASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 AC005336.2-201ENST00000593183 939 ntBASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 BNIP3P18-201ENST00000593976 575 ntBASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLCF1Q9UBD9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLCF1Q9UBD9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLCF1Q9UBD9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLCF1Q9UBD9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.08■□□□□ 0.17
CLCF1Q9UBD9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLCF1Q9UBD9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLCF1Q9UBD9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.08■□□□□ 0.17
CLCF1Q9UBD9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.08■□□□□ 0.17
CLCF1Q9UBD9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms