Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 AC010240.3-201ENST00000607688 395 ntBASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 AC092865.7-201ENST00000641832 219 ntBASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM54Q9BYV2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 AC008764.6-201ENST00000595909 2069 ntBASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 AC024243.1-201ENST00000609234 778 ntBASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 AC073912.3-201ENST00000624414 853 ntBASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM54Q9BYV2 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 ESPNP-201ENST00000270691 2015 ntBASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 SDHAP2-201ENST00000455183 2001 ntBASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 AC093677.2-201ENST00000600169 1863 ntBASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 ECEL1P3-201ENST00000427961 737 ntBASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 ATP5G1P1-201ENST00000448724 379 ntBASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM54Q9BYV2 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 AC133561.5-201ENST00000635547 218 ntBASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM54Q9BYV2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms