Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPRD1AQ96P16 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPRD1AQ96P16 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPRD1AQ96P16 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.69■□□□□ 0.58
RPRD1AQ96P16 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 TSPY12P-201ENST00000421279 868 ntBASIC18.68■□□□□ 0.58
RPRD1AQ96P16 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 GUSBP12-201ENST00000513727 720 ntBASIC18.68■□□□□ 0.58
RPRD1AQ96P16 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 KRT18P1-202ENST00000452408 1331 ntBASIC18.68■□□□□ 0.58
RPRD1AQ96P16 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RPRD1AQ96P16 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 ATP5G2P1-201ENST00000433580 426 ntBASIC18.67■□□□□ 0.58
RPRD1AQ96P16 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 AP002414.4-201ENST00000589764 1148 ntBASIC18.67■□□□□ 0.58
RPRD1AQ96P16 AC092119.3-201ENST00000612618 583 ntBASIC18.67■□□□□ 0.58
RPRD1AQ96P16 NPAP1P7-201ENST00000613027 823 ntBASIC18.67■□□□□ 0.58
RPRD1AQ96P16 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.67■□□□□ 0.58
RPRD1AQ96P16 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 AC093677.2-201ENST00000600169 1863 ntBASIC18.67■□□□□ 0.58
RPRD1AQ96P16 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.67■□□□□ 0.58
RPRD1AQ96P16 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 AP002383.4-201ENST00000442518 975 ntBASIC18.66■□□□□ 0.58
RPRD1AQ96P16 HCG4P8-203ENST00000443049 980 ntBASIC18.66■□□□□ 0.58
RPRD1AQ96P16 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 AL592071.1-201ENST00000611956 408 ntBASIC18.66■□□□□ 0.58
RPRD1AQ96P16 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 AC124864.1-201ENST00000623408 392 ntBASIC18.66■□□□□ 0.58
RPRD1AQ96P16 AC090340.1-201ENST00000620778 4980 ntBASIC18.66■□□□□ 0.58
RPRD1AQ96P16 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms