Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 SERBP1P1-201ENST00000396021 1160 ntBASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 AL513523.2-202ENST00000427283 2040 ntBASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 AC087633.2-202ENST00000565166 1439 ntBASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 UNC93B3-201ENST00000308076 687 ntBASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 SAPCD2P1-201ENST00000395413 1184 ntBASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 AC091799.1-201ENST00000422823 811 ntBASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 YBX1P1-201ENST00000445822 960 ntBASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 AC133561.4-201ENST00000566112 224 ntBASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 FAM45BP-202ENST00000592932 1624 ntBASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN3Q8NCR9 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 AC104581.4-201ENST00000623126 3052 ntBASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 AC092384.3-202ENST00000564646 2873 ntBASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms