Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 TESC-206ENST00000541210 936 ntTSL 3 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 AC106886.4-201ENST00000623557 2502 ntBASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28AQ8IWP9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 AC104640.1-201ENST00000562617 2109 ntBASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 ANKRD18DP-204ENST00000455355 1975 ntBASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 POR-209ENST00000439269 1858 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 AC091799.1-201ENST00000422823 811 ntBASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 AC007322.3-201ENST00000426526 701 ntBASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 TERF1P2-201ENST00000583350 1212 ntBASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28AQ8IWP9 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms